PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PIN18972.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 298aa MW: 31341.5 Da PI: 9.654 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30 | 9e-10 | 102 | 127 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck+Gd+C+FaHg+ PIN18972.1 102 KTRLCNKYKTAEGCKFGDKCNFAHGE 127 8***********************96 PP | |||||||
2 | zf-CCCH | 38.2 | 2.4e-12 | 265 | 290 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC +fa+ G C +G+rC+FaHg+ PIN18972.1 265 YKTKLCENFAK-GSCTFGERCHFAHGE 290 9**********.*************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 298 aa Download sequence |
MEFGGAKKRG RAEGGVNGNG GFKKSKQEME SFTSGIGSKL KPCTKFFSAS GCPFGDGCHF 60 LHYVPGGIKA VTQMLGSNPA LPAAARNPVA PSFPDGPSSV VKTRLCNKYK TAEGCKFGDK 120 CNFAHGEWEL GRPTVPSHDD PRAMGQIPGR YGGGRMDPTP PNLGVAASFG ASATAKISID 180 ASLAGAVIGK SGVNSKQICR LTGAKLSVRD HESDPNLRNI ELEGSFDQIK QASQMVRELI 240 VNLSAASGPP AKHPGKPSLN PGNNYKTKLC ENFAKGSCTF GERCHFAHGE EELRKSGS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 6 | 12 | AKKRGRA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06770.1 | 4e-80 | C3H family protein |