PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN18769.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 356aa MW: 39658.9 Da PI: 7.8823

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN18769.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.9	2.6e-06	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ PIN18769.1 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 99**6666.***********5 PP
2	zf-CCCH	23.7	8.5e-08	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C yG+rC++ H+ PIN18769.1 34 ICTFYQK-GVCAYGSRCRYEHV 54 7****.*********997 PP
3	zf-CCCH	19.2	2.1e-06	139	159	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ fa+ G+C++G++C+ +Hg PIN18769.1 139 ICS-FAAAGHCPRGEKCPHIHG 159 688.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MSKRVLCKFF AHGACLKGEH CEFSHDWKAP PNNICTFYQK GVCAYGSRCR YEHVKVSRSQ 60 SSAPSSSEHV SFPVERLSGS AVHSGGIASD VDAQQAASSQ AFYPPSRAAW GEMPGHGDAL 120 DGDYNVVYFG NGEPTDLSIC SFAAAGHCPR GEKCPHIHGD LCPICGKQCL HPFRPQEREE 180 HMKTCEKRQK HLDALRHSQE IECSVCLERV LSKPTAAERK FGILSECDHP FCISCIRNWR 240 SSSPASGLDV NTALRACPIC RKLSYFVIPS VIWYSSKEEK QDIIETYKAK LRSIDCKHFD 300 FGSGTCPFGT SCFYKHAYRD GRLEEPVLRH LGAEDGNTVI AKNIRLSDFL SNLQIR

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MSKRVLCKFF AHGACLKGEH CEFSHDWKAP PNNICTFYQK GVCAYGSRCR YEHVKVSRSQ  60
SSAPSSSEHV SFPVERLSGS AVHSGGIASD VDAQQAASSQ AFYPPSRAAW GEMPGHGDAL  120
DGDYNVVYFG NGEPTDLSIC SFAAAGHCPR GEKCPHIHGD LCPICGKQCL HPFRPQEREE  180
HMKTCEKRQK HLDALRHSQE IECSVCLERV LSKPTAAERK FGILSECDHP FCISCIRNWR  240
SSSPASGLDV NTALRACPIC RKLSYFVIPS VIWYSSKEEK QDIIETYKAK LRSIDCKHFD  300
FGSGTCPFGT SCFYKHAYRD GRLEEPVLRH LGAEDGNTVI AKNIRLSDFL SNLQIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-159	C3H family protein