PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN18595.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 331aa    MW: 37962.4 Da    PI: 9.1689
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN18595.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF435.6e-141353545
                SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 +  r++tf kR++g++ K +E  +LCd+ +++ii++++++
  PIN18595.1 13 KEKSRNITFKKRKEGLIRKMHEFTTLCDVSACMIIYGPKQE 53
                567899********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MGRAKLNMEL IPKEKSRNIT FKKRKEGLIR KMHEFTTLCD VSACMIIYGP KQEKGPVEPD  60
VWPQNLDEIH RIIDIYKSRN KDSSNKTFGL SDFFHDRKRK IEEELAKLKK KNMEAKYPTW  120
LEYMNFLTES QLRDFAAKLT NKAEYVKSRI DFLTRNKDQG LNMNLVDFSH ARLSQSHSTF  180
YSPAVMGGIE LEVINQQAIS SLKPIEMHVP IRYPTTIDHH HQELHSLNQN SMMMVLMNDH  240
NDQCVQLGGA STSGNISFKR QVFYESTSAG RGVVDPMISQ RPLARYYAPP VPVPCSVMPG  300
VAPPQLQFSV GDGGQDDGGQ YQMNHRARYY D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106112AKLKKKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.14e-17M-type_MADS family protein