PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN18329.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 483aa MW: 54968.4 Da PI: 8.2086

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN18329.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1.1e-06	7	30	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC+ ++r G C++ C+FaHg PIN18329.1 7 YKTKLCMLYQR-GRCSR-QFCNFAHG 30 9********.*.*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MVEKKLYKTK LCMLYQRGRC SRQFCNFAHG SAELRRSFDG RQEYREGRDL RERLDRMRSP 60 LHKSPGRGDA KVRHSSHGDS PRSIGKRIDR NNRKRKHLDG HSDYSGRMSD GTLSDTRIRI 120 DEQLREMQSE MKMLESDKRQ LEIYVEDMEK EADTLTLKLQ ELEKQLSKEK EECKRNNVNI 180 SSHKSQQFSM NLFLYMMMLN PLGYLGVRHL FFSRPLFTFS IWSTLFSRFT NKIKKFIKAH 240 NRHLQLQDEL KRSQAQLQKL GEQLDLDTAG PGNEDDSKMN TTSDDVTGGY AVSPLNEGQM 300 NSSPQRKRSR VVQEAYDASN QVNPVGGRTE IGKNRVEKFS RQSGNHDQLS NSRKPDTGGD 360 AYSEHGSLTY EDKSKRGINL PADISSADKY KACETGPPLP STGIAAHAMD EDVEVVETDD 420 KSQRVGASST GAETETSFKT SRLPFLPPPP PPIPQNVYSQ YKGDDEKVDI DGVDEDTVEV 480 DIV

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MVEKKLYKTK LCMLYQRGRC SRQFCNFAHG SAELRRSFDG RQEYREGRDL RERLDRMRSP  60
LHKSPGRGDA KVRHSSHGDS PRSIGKRIDR NNRKRKHLDG HSDYSGRMSD GTLSDTRIRI  120
DEQLREMQSE MKMLESDKRQ LEIYVEDMEK EADTLTLKLQ ELEKQLSKEK EECKRNNVNI  180
SSHKSQQFSM NLFLYMMMLN PLGYLGVRHL FFSRPLFTFS IWSTLFSRFT NKIKKFIKAH  240
NRHLQLQDEL KRSQAQLQKL GEQLDLDTAG PGNEDDSKMN TTSDDVTGGY AVSPLNEGQM  300
NSSPQRKRSR VVQEAYDASN QVNPVGGRTE IGKNRVEKFS RQSGNHDQLS NSRKPDTGGD  360
AYSEHGSLTY EDKSKRGINL PADISSADKY KACETGPPLP STGIAAHAMD EDVEVVETDD  420
KSQRVGASST GAETETSFKT SRLPFLPPPP PPIPQNVYSQ YKGDDEKVDI DGVDEDTVEV  480
DIV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	6e-13	C3H family protein