PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN18022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | C3H | ||||||||
Protein Properties | Length: 233aa MW: 25891.8 Da PI: 8.988 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.5 | 6.1e-10 | 62 | 87 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ tG+Ck+G CkF H++ PIN18022.1 62 GEKECSYYIMTGQCKFGVMCKFDHPQ 87 6789********************97 PP | |||||||
2 | zf-CCCH | 29.7 | 1.1e-09 | 156 | 175 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +++rtG Ck+G++Ck++H+p PIN18022.1 156 YYLRTGDCKFGATCKYHHPP 175 8*****************97 PP | |||||||
3 | zf-CCCH | 36.5 | 8.3e-12 | 194 | 220 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++rtG Ck+G+ Ck++H+p PIN18022.1 194 PGQPECLYYLRTGDCKFGAACKYHHPP 220 5789*********************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MRTGIRKFGA SCKYHHPKHG VGSSAPVTLN VCGYPLRLVC LFENLGSCSI FYSITYESLL 60 QGEKECSYYI MTGQCKFGVM CKFDHPQPAG LEPVVLGDWL LNRLGAGPVY GIMLLSPSAT 120 AYTGPYLSIT SSAGLSSSSQ KGRAFPERPG QPERLYYLRT GDCKFGATCK YHHPPDLGLT 180 SSSSQKEHAF LERPGQPECL YYLRTGDCKF GAACKYHHPP ELGFRRLRWR SRL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16540.3 | 4e-38 | C3H family protein |