PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN17750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | LSD | ||||||||
Protein Properties | Length: 176aa MW: 18224.1 Da PI: 7.9441 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 33.1 | 9.5e-11 | 9 | 33 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrt+L YPr A +V+Ca+C+ V PIN17750.1 9 CMGCRTVLLYPREAANVCCAVCNVV 33 99*********************98 PP | |||||||
2 | zf-LSD1 | 46.9 | 4.4e-15 | 48 | 72 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ PrGA+sVRC++C+tV PIN17750.1 48 CGGCRTLLMHPRGATSVRCSCCHTV 72 ************************9 PP | |||||||
3 | zf-LSD1 | 49 | 1e-15 | 89 | 113 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ PIN17750.1 89 CGNCHTMLMYPAGAPSVKCAICHFI 113 ***********************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence |
MDMQSQLVCM GCRTVLLYPR EAANVCCAVC NVVNAVPPAG MDMAQLICGG CRTLLMHPRG 60 ATSVRCSCCH TVNLVPAAPA PNNVAHVNCG NCHTMLMYPA GAPSVKCAIC HFITNTGDSR 120 VPIPAHRPGG TLTSASTSST STATAHSQNQ TVVVQNPMTV DESGKLVSNV VVGVTT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 4e-46 | LSD family protein |