PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN17533.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 503aa MW: 56895.5 Da PI: 5.3403

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN17533.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.7	2.6e-10	181	202	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f++ G+CkyG++C+F H+ PIN17533.1 181 PICDNFRQ-GYCKYGGNCRFLHV 202 68****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence
MDYLESTKVV FQRIQKHDPE NVSRIIGYLL LKGYGELEMI RLAFGPEYVI QTLIEQVKRE 60 MNSSPKPIIS SNISVPQTKC SDLSTKFTPF TPAASSSTWS YAADNGKWIP QLVHNFQYIP 120 IASGGYVLQN HPQFLSFEDQ LAGSYFHAPN YVLEVATHAM PVQMSQSVPE FCPNFPELSI 180 PICDNFRQGY CKYGGNCRFL HVLQMESGYF MVLNPPSTDD VVSSNGSLKQ LEREMIELLR 240 SRRGIPISIS SLPILYYDQY GKVLEIEGYL TEAHRQGKLC CGLSQLLAHM TSSIRLIDRP 300 HGQQSIILTD DIHKYMRFIE GSNDQESSFN FGPVQEVRIP IQEKRMFGFV TFVYPETAAL 360 VLTKTNPHYI CGSQVLAKPY RQRPMLVDRK TDYKVQQPIH NDPCSPDAES KPSSTPNEKT 420 KLLKKQQTEE TEPAVDLDRK HFSDTEVTES LSPPEGVLNI GCTSEDKDGD IKTCNNDQQS 480 FEELNLPDSP FSYEVALEIP SSI

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence

MDYLESTKVV FQRIQKHDPE NVSRIIGYLL LKGYGELEMI RLAFGPEYVI QTLIEQVKRE  60
MNSSPKPIIS SNISVPQTKC SDLSTKFTPF TPAASSSTWS YAADNGKWIP QLVHNFQYIP  120
IASGGYVLQN HPQFLSFEDQ LAGSYFHAPN YVLEVATHAM PVQMSQSVPE FCPNFPELSI  180
PICDNFRQGY CKYGGNCRFL HVLQMESGYF MVLNPPSTDD VVSSNGSLKQ LEREMIELLR  240
SRRGIPISIS SLPILYYDQY GKVLEIEGYL TEAHRQGKLC CGLSQLLAHM TSSIRLIDRP  300
HGQQSIILTD DIHKYMRFIE GSNDQESSFN FGPVQEVRIP IQEKRMFGFV TFVYPETAAL  360
VLTKTNPHYI CGSQVLAKPY RQRPMLVDRK TDYKVQQPIH NDPCSPDAES KPSSTPNEKT  420
KLLKKQQTEE TEPAVDLDRK HFSDTEVTES LSPPEGVLNI GCTSEDKDGD IKTCNNDQQS  480
FEELNLPDSP FSYEVALEIP SSI