PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN16674.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family C3H
Protein Properties Length: 441aa    MW: 48092.2 Da    PI: 7.9055
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN16674.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.4e-08118138425
                 ---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                 +lC+++ + G Ck+Gd+Ck+ H
  PIN16674.1 118 KLCNHWVQ-GSCKFGDNCKYLH 138
                 69******.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    
MNMDGGRRVF HRFGSSSSSD NGGSNNSKQQ KVCFHWRQGK CTRYPCPFLH SELPNAGSGK  60
RAHQGLGAEE NQRGGRGGLR RSANYYFNNN NNNNNTWGRV QSQQPVSSNM TTVKKIEKLC  120
NHWVQGSCKF GDNCKYLHQW STGDCFSLLA PLEGHQQVVT GIALPSGSDK LYTGSQDETV  180
RLWDCQSGQL AGLVNLGGAV GCMLSEGPWV FVGLANLVKA WNVLTSTDLS LNGPVGQVYS  240
LVVGNDLLFA GTQDGTILAW KCNVAANCFE PAASFKGHTL AVVTLVVGGN RMYSGSMDHS  300
IKVWSLETLQ CIQTLSGHTD VVMSVLCWDQ FLLSASLDKT VKVWVATETG NLEVTYTHTE  360
EHGLLTLCGM HDSEAKPVLL CSCNDNSIRV YDLPSFSERG RIFGKKEVRS IQIGPGGLFF  420
TGDGSGQVRV WKWSAEQTLT S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0C3H family protein