PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PIN16209.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 229aa MW: 25161.5 Da PI: 4.9505 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.8 | 1.2e-22 | 24 | 67 | 1 | 44 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 k+ien snrqvtfskRr g++KKA+EL++LC+ae+a+i+ s PIN16209.1 24 KKIENLSNRQVTFSKRRGGLFKKASELCILCGAEIAIIVHSLGK 67 68*************************************98655 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence |
MVILKNNTQM TKKTTQGRKK IEIKKIENLS NRQVTFSKRR GGLFKKASEL CILCGAEIAI 60 IVHSLGKRVF VFGHTTVDSV IDRFLSGGGA AAEGAENCLV AKTRDYDQHC SDVCRELEAE 120 KRRREAIEEG KRAAGGDGGF WWNAAVEELD VEELEEYAAA LEELMKNVTL RADDLMLINS 180 AAAAGRTVEA YDGEGCHLLE DMGAFVDQNQ GITCGLDDGG FGNFKFLDF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-31 | M-type_MADS family protein |