PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN15797.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

SRS

Protein Properties

Length: 369aa MW: 38520 Da PI: 7.0194

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN15797.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	224.4	2.3e-69	127	281	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...aeaaskrkrelkskkqsalsstklssaesk 97 +sg++sCqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a+++++++++ +++a kr+re + + +++l +t++++++s+ PIN15797.1 127 GSGGISCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTALQQSQQQDQkqrESSAGKRQRE-NPSPSNSLVCTRIPTNNST 224 57899************************************************999988877765534555556665.599999******999 PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++P+e seavfrcvrvs+vdd+e+++aYq+av+i GhvfkGiLydqG+e+ PIN15797.1 225 GLELGNNFPSEATSEAVFRCVRVSAVDDAEDQYAYQAAVNICGHVFKGILYDQGTES 281 9989999*********************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MAAFFSLGGG GGGGGGRGTG GGTSAGAGNP ADQENSSHHN QSELNPESWF LFRNEEISYR 60 GFELWQPSHH HHQPENFLHR SGGNINPLQD LYASAGGLAV GPSRGSGFSI SDEGPPRSGF 120 LMMRSSGSGG ISCQDCGNQA KKDCPHLRCR TCCKSRGFQC QTHVKSTWVP AAKRRERQQQ 180 LTALQQSQQQ DQKQRESSAG KRQRENPSPS NSLVCTRIPT NNSTGLELGN NFPSEATSEA 240 VFRCVRVSAV DDAEDQYAYQ AAVNICGHVF KGILYDQGTE SQYMAGAAAG ETSSGGGSVS 300 AGVQQLNLIT GTTSATATSA QDTAAGTGGG GGGGGSASEA SPFLDPSSYP PPINSFMAAG 360 TQFFLPPRS

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MAAFFSLGGG GGGGGGRGTG GGTSAGAGNP ADQENSSHHN QSELNPESWF LFRNEEISYR  60
GFELWQPSHH HHQPENFLHR SGGNINPLQD LYASAGGLAV GPSRGSGFSI SDEGPPRSGF  120
LMMRSSGSGG ISCQDCGNQA KKDCPHLRCR TCCKSRGFQC QTHVKSTWVP AAKRRERQQQ  180
LTALQQSQQQ DQKQRESSAG KRQRENPSPS NSLVCTRIPT NNSTGLELGN NFPSEATSEA  240
VFRCVRVSAV DDAEDQYAYQ AAVNICGHVF KGILYDQGTE SQYMAGAAAG ETSSGGGSVS  300
AGVQQLNLIT GTTSATATSA QDTAAGTGGG GGGGGSASEA SPFLDPSSYP PPINSFMAAG  360
TQFFLPPRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	22	GGGGRGTGGG
2	14	23	GGGGRGTGGG
3	15	24	GGGGRGTGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	9e-62	SRS family protein