PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN14925.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 262aa    MW: 30008.9 Da    PI: 5.3193
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN14925.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.12.4e-231059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                ri+n   rqvt++kR+ gi KKA+EL +LCd++va+i+fs+tg+l  ++s
  PIN14925.1 10 RIDNAATRQVTYAKRKDGIVKKANELAILCDTDVALIMFSPTGRLTGFAS 59
                8********************************************99975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MGRKKLAVRR IDNAATRQVT YAKRKDGIVK KANELAILCD TDVALIMFSP TGRLTGFASN  60
GRVEDIFLRF VDRPDELRGG PINNEEFLSR RLKELKFEGE MLEKIAIQRF ECKFELELEL  120
DLEEKLDKLN RRQRESVEKL RYYAPNVENI NSVLEAGVYQ QFLTSAIQRI QLSKAKLLGN  180
QLVHERNENI ELQGTTVQIE DVALVTENSI DGNQNRVNST RDEDQSGTSL SVEPHLNLSF  240
FEAQKQWNKL GNELSSSSLD NY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.14e-30MIKC_MADS family protein