PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN14482.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 266aa    MW: 30246 Da    PI: 5.0042
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN14482.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.35.3e-25958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                k+ien++nrqvtfskRr g++KKA+E+ vLCd++ a+i+fs++g+l  +s
  PIN14482.1  9 KKIENTTNRQVTFSKRRYGLIKKAYEIAVLCDIDLALIMFSNSGRLSHFS 58
                68********************************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MGRSKLPIKK IENTTNRQVT FSKRRYGLIK KAYEIAVLCD IDLALIMFSN SGRLSHFSGR  60
KRVEDVFYRY IDLPDRDRGG VIPNREQIIN TIAKIKTEKD LAMESPATPG SDIEEIQKQI  120
IDLQHQLERD EEQLRVFEPE SEKLTSLEEF EACEVRLMEA LRRVTQRKRI LLSKVGQQSS  180
YQDTIQQINT VVQYITEAQV VGNEGDHGIE LGNGDHMTIG SDASSLNIRE RSTAMIFDSL  240
SQTSGNENAQ SAEGYQSSNI NEEVFQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.14e-62MIKC_MADS family protein