PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN14151.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family C3H
Protein Properties Length: 353aa    MW: 39527.3 Da    PI: 6.7216
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN14151.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.9e-08139159526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C++f++ G C+ Gd C FaHg
  PIN14151.1 139 ACPDFRK-GNCRKGDACEFAHG 159
                 7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MMLGERSYGG ITVHVPPWSS ASDDPSSFCL SPNAANANGS IDDYSAFFQS DSLKALQRYL  60
PSNSNDTVPE LQFLDSDNGG NGDFVPVDAH SCDHFRMFEF KVRKCTRGRS HDWTECPFAH  120
PGEKARRRDP RKFHYSGTAC PDFRKGNCRK GDACEFAHGV FECWLHPARY RTQPCKDGMN  180
CKRRVCFFAH SPDQLRVLSP RAESYDGSPH RLAFMSSPES VSPPAESPPM SPMTGNSVNE  240
MVASLRQLHL TKVKSMPTSW LGGCSSPRMK MTLPGYFSTP STPTRAVPRP GIGYFDAWDS  300
PQQEEEEPVE IVESGRDLRA KMFEKLSKEN PLDRVEQELD SNPDVGWVSD LIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-104C3H family protein