PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN13920.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

CO-like

Protein Properties

Length: 340aa MW: 37298.4 Da PI: 5.7349

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN13920.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.6	1.1e-07	11	42	4	35
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 + C+ +++ +++ fC+ ++ +lC C + H PIN13920.1 11 KLCDSCKSAPATVFCRADSAFLCIACDGKVHA 42 68************************999885 PP
2	zf-B_box	29.2	2e-09	53	97	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ +e+ ++++ C+ + lC++C +H+ H++ p PIN13920.1 53 VWVCEVCEQAPASFTCKADAAALCRTCDRDIHSAnplarrHERLP 97 689*****************************6688888898877 PP
3	CCT	69.8	7.2e-24	276	320	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+ae PIN13920.1 276 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRAE 320 9*****************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MGGESWSLTA KLCDSCKSAP ATVFCRADSA FLCIACDGKV HAANKLASRH ARVWVCEVCE 60 QAPASFTCKA DAAALCRTCD RDIHSANPLA RRHERLPLVP FYDAASATKS SSAAAAVEEF 120 SEEEAEAASW LLPNPNNKSD EESRSPEYKS AEYLFGDMDP YLGLDLIAGE QKAGHGNNGN 180 EQKQYSSDGV VPVQNKNEYG SGQYPGPVVD GYPTYDVEYP GSKPFMYNFT SQSISQSVSS 240 SSMEVGVVPD HNSMADVSNT FTKNEVIPDP DSGVDREARV LRYREKRKNR KFEKTIRYAS 300 RKAYAETRPR IKGRFAKRAE IEVDSLLTTD ASSYGVVPTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	2e-90	CO-like family protein