PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN13285.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

MYB

Protein Properties

Length: 352aa MW: 39315.6 Da PI: 9.5898

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN13285.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ + + g+ R++k+c++rw +yl PIN13285.1 14 KGPWTPEEDQKLLTYIQEHGHGSWRALPPKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.3	6.3e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia++++ +Rt++++k++w+++l PIN13285.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIASHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MGRSPCCDKV GLKKGPWTPE EDQKLLTYIQ EHGHGSWRAL PPKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIASHLPKRT DNEIKNYWNT HLKKRLMKMG 120 IDPMTHKPKN HALGSGQPKD TANLSHMAQW ESARLEAEAR IVRENKLASS SIYSKLLKAT 180 TTARPPQPRP PCLDILKVWQ GAWTKPRKDT TTKTVNGFFA TKGNLESPTS ILNFSENMVP 240 TPNVGLIQEN SLVRDISYLG NPIGKNNDDQ VKGTMENSVQ FHDIIDPTSF ITYAADSLGV 300 PSFLEGYTDF APNTSSASAA TGPADDVFED NKISYWSNIL NVVNSPIDST VF

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MGRSPCCDKV GLKKGPWTPE EDQKLLTYIQ EHGHGSWRAL PPKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIASHLPKRT DNEIKNYWNT HLKKRLMKMG  120
IDPMTHKPKN HALGSGQPKD TANLSHMAQW ESARLEAEAR IVRENKLASS SIYSKLLKAT  180
TTARPPQPRP PCLDILKVWQ GAWTKPRKDT TTKTVNGFFA TKGNLESPTS ILNFSENMVP  240
TPNVGLIQEN SLVRDISYLG NPIGKNNDDQ VKGTMENSVQ FHDIIDPTSF ITYAADSLGV  300
PSFLEGYTDF APNTSSASAA TGPADDVFED NKISYWSNIL NVVNSPIDST VF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-109	MYB family protein