PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN12860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 147aa MW: 16693.5 Da PI: 10.2619 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 26.8 | 6.5e-09 | 11 | 53 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i+n tf kR++g K +ELS+L ++++ +ii++++++ PIN12860.1 11 ISNRKALFKTFEKRKKGQEKATHELSTLYEVDIGMIIYGPDQT 53 666666667*******************************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence |
MVRAKLRMEL ISNRKALFKT FEKRKKGQEK ATHELSTLYE VDIGMIIYGP DQTEKFKEEM 60 QKLSKRMRGA KYPTWDEKYN CLLYDQLKEI VTVLMAKIGA VKVRINSMKG SRIPVSESSL 120 DESVGSRKCS FHAGFSSTST AAAFGVL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 1e-06 | M-type_MADS family protein |