PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN12206.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C2H2

Protein Properties

Length: 443aa MW: 47346.1 Da PI: 8.8799

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN12206.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.4e-05	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H PIN12206.1 69 FICEVCNKGFQRDQNLQLHRRGH 91 89*******************88 PP
2	zf-C2H2	17.3	1.3e-05	145	167	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k + +s+ k H++t+ PIN12206.1 145 YKCERCSKKYAVQSDWKAHMKTC 167 9********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MVEIENPSQP SLSPASGETN SLLNNQAKSD QPAEVIQPTK KKRSLPGMPD PDAEVIALSP 60 KTLLATNRFI CEVCNKGFQR DQNLQLHRRG HNLPWKLRQR TSKEIKKRVY VCPEPTCIHH 120 DRSRALGDLT GIKKHFCRKH GEKKYKCERC SKKYAVQSDW KAHMKTCGTR EYRCDSELPE 180 NQNAQLPPPP LPQPLTTSTA TATMTTTMAT ATIATNTSSS TSSGGVFASI LNPSTSQLSQ 240 SIQQPSSSCS SGLLCPMAGP DQTAVDPVSL SLSSSLFSTS PLFSPTSQNA QPHYVSRSQP 300 ALSATALLQK AAEMGATSSN SSFLRGLGLA LPSQDNTSTM SSTSTSTGVH DWNNNRSLSS 360 GLGLGLRSSG PSSYNELMMS PSTLFGNKPT TLDFLGLGMG ASEASSGGFS AFLNSIGGGL 420 NMTTTSFSGD AWDDSSERKP SLL

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MVEIENPSQP SLSPASGETN SLLNNQAKSD QPAEVIQPTK KKRSLPGMPD PDAEVIALSP  60
KTLLATNRFI CEVCNKGFQR DQNLQLHRRG HNLPWKLRQR TSKEIKKRVY VCPEPTCIHH  120
DRSRALGDLT GIKKHFCRKH GEKKYKCERC SKKYAVQSDW KAHMKTCGTR EYRCDSELPE  180
NQNAQLPPPP LPQPLTTSTA TATMTTTMAT ATIATNTSSS TSSGGVFASI LNPSTSQLSQ  240
SIQQPSSSCS SGLLCPMAGP DQTAVDPVSL SLSSSLFSTS PLFSPTSQNA QPHYVSRSQP  300
ALSATALLQK AAEMGATSSN SSFLRGLGLA LPSQDNTSTM SSTSTSTGVH DWNNNRSLSS  360
GLGLGLRSSG PSSYNELMMS PSTLFGNKPT TLDFLGLGMG ASEASSGGFS AFLNSIGGGL  420
NMTTTSFSGD AWDDSSERKP SLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	2e-88	C2H2 family protein