PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN11757.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 318aa MW: 35638.9 Da PI: 7.3798

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN11757.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	47.9	2.1e-15	241	266	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yG++C+FaHg PIN11757.1 241 FKTELCNKWQETGACPYGENCQFAHG 266 79***********************8 PP
2	zf-CCCH	21.8	3.3e-07	279	303	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ykte Cr +++ +C+yG rC+F H PIN11757.1 279 YKTEVCRMVMAGEICPYGHRCHFRH 303 9********66********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MQKENISYNA FTAISAAGKS SASAEAPLHL ISSINPFTSP TYVTSDAPFY TSLFHKSSSD 60 SPSETASFDD GDTDGQVHEG SCILEYQQLY NRYTLCLAQL NDSIEEVDAL RRENESLRLT 120 NADLSRRLVF LFSRDRLFSD FNGLNVAPHS AAAPRAAHLT TTHPLTEHNR GEPRSTERVL 180 SLPKSISVRS SGYPKMTRPG HGTTGHKAVS QGAAESERVY VPMSKKEKEA LEFDAYDQGM 240 FKTELCNKWQ ETGACPYGEN CQFAHGINEL RPVIRHPRYK TEVCRMVMAG EICPYGHRCH 300 FRHTLTEKER LMAVQPRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	3e-68	C3H family protein