PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN11181.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | C3H | ||||||||
Protein Properties | Length: 370aa MW: 40319.4 Da PI: 8.397 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.9 | 2.5e-11 | 40 | 63 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C +++rtG+C yG++C+++H++ PIN11181.1 40 ADCAYYMRTGYCGYGAKCRYNHPR 63 78********************96 PP | |||||||
2 | zf-CCCH | 40.3 | 5.1e-13 | 80 | 104 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++CkF+H++ PIN11181.1 80 EPACQYYLRTGTCKFGASCKFNHPK 104 689********************96 PP | |||||||
3 | zf-CCCH | 33.9 | 5.2e-11 | 125 | 150 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF H++ PIN11181.1 125 GEKECSYYLKTGQCKFGMTCKFDHPQ 150 7899********************97 PP | |||||||
4 | zf-CCCH | 41.9 | 1.7e-13 | 282 | 308 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++rtG CkyG++C+++H+p PIN11181.1 282 PGQPDCKYYMRTGDCKYGSSCRYNHPP 308 5789*********************97 PP | |||||||
5 | zf-CCCH | 25.7 | 2e-08 | 329 | 354 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + C+f+++ +Ck+G +CkF H++ PIN11181.1 329 GVQACPFYLQKRYCKFGHTCKFDHPM 354 5678********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence |
MEFYGDQQQP EWAQETGLGE SMRSLNLWDT EVYPERPGLA DCAYYMRTGY CGYGAKCRYN 60 HPRDRSSSLG GADYPERVGE PACQYYLRTG TCKFGASCKF NHPKNGGGSL INAPLNIYGY 120 PLRPGEKECS YYLKTGQCKF GMTCKFDHPQ PAGTPIPAPA RPFYPTMQSL SSPSPSPEQY 180 DSSTTGYRVA RPPLLPGSYV AGAYGPMLLP GVVPIPNWNP YSGSVSPAPS PGAQPSVGAA 240 SMYGLSQLGS SAPAFSGAYS QLPSPAGPSG SITKEHKFPE RPGQPDCKYY MRTGDCKYGS 300 SCRYNHPPDW LVSRSDCALS PLGLPLRPGV QACPFYLQKR YCKFGHTCKF DHPMTTVKYS 360 PASSYTEMPG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-145 | C3H family protein |