PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PIN11044.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 298aa MW: 33522.4 Da PI: 9.9424 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1e-16 | 72 | 117 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v q+G+++W++Ia+ + gR++k+c++rw++ PIN11044.1 72 RGHWRPHEDAKLKQLVSQFGPHNWNLIAQNLE-GRSGKSCRLRWFNQ 117 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.7 | 2.7e-18 | 124 | 167 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+ PIN11044.1 124 RRSFSEEEEERLLAAHKLYGNK-WAMIARLLP-GRTDNAVKNHWHV 167 6789******************.*********.***********96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 298 aa Download sequence |
MTFVAPPDAP LFRVQETGAR GSTGTGFDEI LNNNLKSFDS LKDEGVMNWE YNGSEEDKIG 60 RKNNGVTKLC SRGHWRPHED AKLKQLVSQF GPHNWNLIAQ NLEGRSGKSC RLRWFNQLDP 120 RINRRSFSEE EEERLLAAHK LYGNKWAMIA RLLPGRTDNA VKNHWHVIMA RKHRELNCVY 180 RRRKPSLLQV QRKGFPSISN LQTPHASSES TISSSSNNVH QQNVTRSEDG GERLVLAVGG 240 SEIKNQDHQI AHSDYYSNSQ VSAASQSVAA NKRANLFTCG ENHTGKITFI DFLGVGAT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69560.1 | 8e-63 | MYB family protein |