PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN10876.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 914aa MW: 101279 Da PI: 8.7365

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN10876.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.7	8.7e-08	203	224	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +Cr+fa+ G C+ G +C+F H++ PIN10876.1 203 ICRDFAA-GRCRKGTQCRFLHPK 224 7****.***********96 PP
2	zf-CCCH	21.8	3.2e-07	287	308	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f++ G C+ Gd+C+F+H PIN10876.1 287 VPCKDFMK-GKCRWGDNCRFSHH 308 59****.***********6 PP
3	zf-CCCH	18.2	4.4e-06	336	357	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 + +lC++fa+ G C + d+C+F+H PIN10876.1 336 GKPLCKYFAA-GRCDR-DNCRFSH 357 679****9.*.***** PP

Sequence ? help Back to Top
Protein Sequence Length: 914 aa Download sequence
MGERRKRKSL WDAEGETRHF SGMGEHNSWT GKEHHSGHNS GRYHEFSASG TYTALRSRDH 60 SGHPSWESIE ETPVASRSSG FIRIRHNAPE GKELGGGNRD YQNMSPGFDG MERRKYDHSH 120 ENDQSHSRRY LGRGRSRSRS RSRTRGRSRS GSLSRGRGRS RSRSRSDGGG RGVSRSRSPV 180 GDYRRQSYGW GERRSVPDKS SQICRDFAAG RCRKGTQCRF LHPKNVSRED GDHIGDDTAE 240 RSRNRTDRGQ ISKHSYSRGH GFDLRGDVSA PYHGEDEQFP NKSRSAVPCK DFMKGKCRWG 300 DNCRFSHHFA SDETFGRGAR YTSFDKDIEH QSHNSGKPLC KYFAAGRCDR DNCRFSHEDP 360 KFNSLEGRQC EVTDGQSSHD NSNQWNGRTW NDATRILDNV KSGGWGETTV PITNSSSETT 420 EAKNVDKWAS SPVNENRSWG MPEWTNSSVS PDKQPSPPVG SGGYGGNIGT TESSGKENLA 480 NEQEHLLLHG LQLQNKHGNP NVLGQGTLQE DASLPMKAWQ QNVSPVSHMQ QQQQGVVESN 540 LVRSVQSDVL DELKVSTNTT HPIPLSGQIV NQNGESALPG HSSISNETDV GQHMLHSNPS 600 NGVSGDLNGP ETHLVAPLNW QSQMQNHQKA VQVAGMVQQF FPNTLTSEQS AQLTNSQVAV 660 ADQHVAPVTN PPLFPTPIFS NEQSQKNAAV EVPNTWATMP SFPNTLGNVP LINTTNVQPD 720 PVRVSHIPVN PVQNGGDTNE QGNHAEQNYQ IQVGQSSLVP AVGTESDDSK MGHLGSPKLK 780 QETVLANPEV DDCNKATSEE SKGVQNNKQS EILDGNGKAE EGSANKDDKG MRIFKNSLIE 840 FVKDILKPTW KEGRMSREVH KTIVKKVVDK VTSTIQPDHI PRTQEKVEQY LSFSKPKIAK 900 LVQAYVGRCL KTES

Sequence ? help Back to Top

Protein Sequence Length: 914 aa Download sequence

MGERRKRKSL WDAEGETRHF SGMGEHNSWT GKEHHSGHNS GRYHEFSASG TYTALRSRDH  60
SGHPSWESIE ETPVASRSSG FIRIRHNAPE GKELGGGNRD YQNMSPGFDG MERRKYDHSH  120
ENDQSHSRRY LGRGRSRSRS RSRTRGRSRS GSLSRGRGRS RSRSRSDGGG RGVSRSRSPV  180
GDYRRQSYGW GERRSVPDKS SQICRDFAAG RCRKGTQCRF LHPKNVSRED GDHIGDDTAE  240
RSRNRTDRGQ ISKHSYSRGH GFDLRGDVSA PYHGEDEQFP NKSRSAVPCK DFMKGKCRWG  300
DNCRFSHHFA SDETFGRGAR YTSFDKDIEH QSHNSGKPLC KYFAAGRCDR DNCRFSHEDP  360
KFNSLEGRQC EVTDGQSSHD NSNQWNGRTW NDATRILDNV KSGGWGETTV PITNSSSETT  420
EAKNVDKWAS SPVNENRSWG MPEWTNSSVS PDKQPSPPVG SGGYGGNIGT TESSGKENLA  480
NEQEHLLLHG LQLQNKHGNP NVLGQGTLQE DASLPMKAWQ QNVSPVSHMQ QQQQGVVESN  540
LVRSVQSDVL DELKVSTNTT HPIPLSGQIV NQNGESALPG HSSISNETDV GQHMLHSNPS  600
NGVSGDLNGP ETHLVAPLNW QSQMQNHQKA VQVAGMVQQF FPNTLTSEQS AQLTNSQVAV  660
ADQHVAPVTN PPLFPTPIFS NEQSQKNAAV EVPNTWATMP SFPNTLGNVP LINTTNVQPD  720
PVRVSHIPVN PVQNGGDTNE QGNHAEQNYQ IQVGQSSLVP AVGTESDDSK MGHLGSPKLK  780
QETVLANPEV DDCNKATSEE SKGVQNNKQS EILDGNGKAE EGSANKDDKG MRIFKNSLIE  840
FVKDILKPTW KEGRMSREVH KTIVKKVVDK VTSTIQPDHI PRTQEKVEQY LSFSKPKIAK  900
LVQAYVGRCL KTES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	141	RGRSRSRSR
2	133	143	RGRSRSRSRSR
3	135	143	RGRSRSRSR
4	135	145	RGRSRSRSRSR
5	137	145	RGRSRSRSR
6	137	147	RGRSRSRSRSR
7	139	149	RGRSRSRSRSR
8	155	165	RGRSRSRSRSR
9	157	165	RGRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	4e-12	C3H family protein