PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN10775.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 96aa MW: 11089.3 Da PI: 10.0609 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.3 | 4.8e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqvtf+kRrng+lKKA+ELSvLCd++va iifss+gkly ++s PIN10775.1 9 KRIEDKSARQVTFTKRRNGLLKKAKELSVLCDVDVAAIIFSSRGKLYHFCS 59 79***********************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence |
MGRRKLEIKR IEDKSARQVT FTKRRNGLLK KAKELSVLCD VDVAAIIFSS RGKLYHFCST 60 DRLVVFLLHF YFFGILNSNC GVCICARIPM HFLCCQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10140.4 | 4e-28 | MIKC_MADS family protein |