PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN09976.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 317aa MW: 35730.3 Da PI: 8.6161

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN09976.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	49.1	8.8e-16	237	262	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tGtC+yG++C+FaHg PIN09976.1 237 FKTELCNKWQETGTCPYGENCQFAHG 262 79***********************8 PP
2	zf-CCCH	21.2	5e-07	275	300	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ +C+yG rC+F H+ PIN09976.1 275 YKTEVCRMVLAGDICPYGHRCHFRHS 300 9********55********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MQKKNISLDA LNTISTAAGA APLHFSPNNP FLSPSSPTYL NSNASFYTSL FPNYSPNSIS 60 DSASFDGGDN DRRLHDSGCV LEYQQLYNRY TLCLAQLKDS IEEVDALRRE NESLCLSNAD 120 LSRRVALLFS RDRLLSEFNR LNIASPSAAA PLPVHVVNPQ PLTEHNRVEP WNTDRVKLPK 180 SISVRSRGYL KMNRPGRDTT RQKAVSQPSP ASQRVYVPGA KKEQEALELD VYNQGMFKTE 240 LCNKWQETGT CPYGENCQFA HGIKELRPVI RHPRYKTEVC RMVLAGDICP YGHRCHFRHS 300 LTEQERLMAA QSLPPPH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	2e-74	C3H family protein