PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN09417.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 142aa    MW: 16749.5 Da    PI: 9.1094
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN09417.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.52.3e-101452139
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                k+i+n++ +++ f+k  + ++KKA+ LS+LC++++ ++ 
  PIN09417.1 14 KQISNEREKNIAFAKGVESLIKKANDLSILCGVDIGIVF 52
                68*********************************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    
MDFGNLVLKR VSHKQISNER EKNIAFAKGV ESLIKKANDL SILCGVDIGI VFLRISKRER  60
AKKIMTHDKF LKKRLNDEKE DMQKYHNKNH MNESCLLMNE LFTNGKNLTE LDLNQLNMLQ  120
SLADEMLKMI QKREEIDNYY EM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15775KRERAKKIMTHDKFLKKRL
26874DKFLKKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.11e-08MIKC_MADS family protein