PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN08992.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family ARF
Protein Properties Length: 895aa    MW: 98906.8 Da    PI: 6.7307
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN08992.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.5e-24128229199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d+++++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  PIN08992.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHNNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFI--WNEKNQL 222
                 99*****************************8544444..48************************************************..8899999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  PIN08992.1 223 LLGIRRA 229
                 ****997 PP
2Auxin_resp120.71.1e-39254337183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  PIN08992.1 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 337
                 79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    
MKLSSTGLNH QSPEGDKNCL NSELWHACAG PLVSLPSIGS HVVYFPQGHS EQVAVSTNKE  60
VDTQIPNYPN LPPQLICQLH NVTMHADIET DEVYAQMTLQ PLSPQEHKEV SFLPADLGAP  120
SKQPMNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHNNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLIAGD SVLFIWNEKN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYIKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSPF PLRLKRPWPS GLPSFTGMKT DDMGLNSPLL WLRGDFGDRG MQSFNQGMVA  420
TPWMQPRLDP SVLGLQNDIY QAMAAAAIHD MRAVDPPKQV LPSMMQFQQP QAVGTRPSGL  480
VQPQMLQQAQ SSAPFLQIPT TPQSHANVLP QQLLHQNSFN NVQIQQQNQY HQPSAQMQHV  540
IDPQKVSTVA PVVSQLSLSS QAPSQTMQSI SSVHQSFSES NVKPIISNIS SPLHSLLGSV  600
TQDDTSSLFI VPRSGSLPSS NGWPTKRVAL DPLFSGSISQ SISPLIEQLG PPNTNVTHNP  660
VSLPPFPGRE CLIEQEGSND PQNHFLFGVN IDSSSLLMQN LKGVSSDSDN ATIPFASSNY  720
MSSSSADYSL NPTVTSSGRM DESGFLLSSD NVGHANPPNR TFVKVHKSGS FGRSLDITKF  780
SSYNELRSEL AQMFGLEGQL EDPLRSGWQL VFVDRENDVL LLGDDPWQEF VNNVWCIKIL  840
SPQEVHEMGK QGMELLNSVP LQRLPLANGS CDGYGNRQEA RNMSAGIPSV GTLDF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0ARF family protein