PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN08171.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 231aa MW: 26217.5 Da PI: 7.2393 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.9 | 4.7e-12 | 12 | 47 | 5 | 40 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 ++ +r+ tf kR ng+lK A+ LS+LC++++ +++ PIN08171.1 12 SDERRNATFEKRANGLLKNANDLSILCGVDIGIVVH 47 5789***************************99985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence |
MTRKRIKHEQ VSDERRNATF EKRANGLLKN ANDLSILCGV DIGIVVHRQG GPNNEILWPS 60 PSIFRERLQR FMDFPQSERS RKMVTHDKYV EQTMNSEAQD VPKLEKKVVL KESHQLLNEV 120 VQGKSIEELD MYQLNGLSSL VDEMLEMIEK KENQLNQEGT SASVPQEVGT SWSVPQEVGT 180 SWPVPQEVGT SSSVPPEVHL RSVRRGRRGR PRSDAQRGDM DISSPHHGFA P |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 2e-16 | M-type_MADS family protein |