PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN08164.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | C3H | ||||||||
Protein Properties | Length: 490aa MW: 51659 Da PI: 8.1347 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.9 | 3e-12 | 51 | 76 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++++rtG+C yG+rC+F+H++ PIN08164.1 51 DEPDCSYYLRTGFCGYGNRCRFNHPR 76 6899********************96 PP | |||||||
2 | zf-CCCH | 36.4 | 8.9e-12 | 99 | 122 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G++Ck++H++ PIN08164.1 99 TVCQYYMRTGMCKFGASCKYHHPK 122 68********************96 PP | |||||||
3 | zf-CCCH | 36 | 1.2e-11 | 143 | 168 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G++CkF+H++ PIN08164.1 143 GEKECSYYVKTGQCKFGATCKFHHPQ 168 7899********************97 PP | |||||||
4 | zf-CCCH | 37.5 | 4e-12 | 313 | 339 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Cr+++rtG Ck+G++Ck++H+p PIN08164.1 313 PGQPECRHYLRTGDCKFGSSCKYHHPP 339 5789*********************97 PP | |||||||
5 | zf-CCCH | 34.3 | 3.9e-11 | 361 | 384 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C+++a++G Ck+G +CkF H+ PIN08164.1 361 APICSHYAQNGVCKFGLSCKFDHP 384 589********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence |
MERYSGNRAM EAMPVDPAAE WGVPGGEKGL EEPMWQLGLG GGPESYPERP DEPDCSYYLR 60 TGFCGYGNRC RFNHPRDRSA AMGALRARGG EYPERVGETV CQYYMRTGMC KFGASCKYHH 120 PKHGVGSSAP MSLNVYGYPL RPGEKECSYY VKTGQCKFGA TCKFHHPQPA GMQAPAPAPG 180 PGPLAPPAAI PPPAVYPTVQ SPSVQSSQPY GVIHGNWPVP RPAMLPGSYL AGSYGSMFLP 240 PGVVPVPGWT PYPAQVSPVA TPSTQPTVGV GPVYGVTQLS PSATAYTGPY LSITSSAGPS 300 SSSQEEHAFP ERPGQPECRH YLRTGDCKFG SSCKYHHPPE LGASKTNFLL SPAGLPLRPG 360 APICSHYAQN GVCKFGLSCK FDHPIRILSY CPSASSLTDM PVAPYPVGST HATLAPSSSS 420 SDLRPELLSG FSKDAFSSQM SSMNSSSASV GSIFSKSGPA PQSSVHQSGQ DSTSSGGGNT 480 SHGGEVRTSH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 1e-118 | C3H family protein |