PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN08164.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family C3H
Protein Properties Length: 490aa    MW: 51659 Da    PI: 8.1347
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN08164.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.93e-125176227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                +++ C++++rtG+C yG+rC+F+H++
  PIN08164.1 51 DEPDCSYYLRTGFCGYGNRCRFNHPR 76
                6899********************96 PP

2zf-CCCH36.48.9e-1299122427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                   C++++rtG Ck+G++Ck++H++
  PIN08164.1  99 TVCQYYMRTGMCKFGASCKYHHPK 122
                 68********************96 PP

3zf-CCCH361.2e-11143168227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C+++ +tG+Ck+G++CkF+H++
  PIN08164.1 143 GEKECSYYVKTGQCKFGATCKFHHPQ 168
                 7899********************97 PP

4zf-CCCH37.54e-12313339127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++Cr+++rtG Ck+G++Ck++H+p
  PIN08164.1 313 PGQPECRHYLRTGDCKFGSSCKYHHPP 339
                 5789*********************97 PP

5zf-CCCH34.33.9e-11361384326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  ++C+++a++G Ck+G +CkF H+
  PIN08164.1 361 APICSHYAQNGVCKFGLSCKFDHP 384
                 589********************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    
MERYSGNRAM EAMPVDPAAE WGVPGGEKGL EEPMWQLGLG GGPESYPERP DEPDCSYYLR  60
TGFCGYGNRC RFNHPRDRSA AMGALRARGG EYPERVGETV CQYYMRTGMC KFGASCKYHH  120
PKHGVGSSAP MSLNVYGYPL RPGEKECSYY VKTGQCKFGA TCKFHHPQPA GMQAPAPAPG  180
PGPLAPPAAI PPPAVYPTVQ SPSVQSSQPY GVIHGNWPVP RPAMLPGSYL AGSYGSMFLP  240
PGVVPVPGWT PYPAQVSPVA TPSTQPTVGV GPVYGVTQLS PSATAYTGPY LSITSSAGPS  300
SSSQEEHAFP ERPGQPECRH YLRTGDCKFG SSCKYHHPPE LGASKTNFLL SPAGLPLRPG  360
APICSHYAQN GVCKFGLSCK FDHPIRILSY CPSASSLTDM PVAPYPVGST HATLAPSSSS  420
SDLRPELLSG FSKDAFSSQM SSMNSSSASV GSIFSKSGPA PQSSVHQSGQ DSTSSGGGNT  480
SHGGEVRTSH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-118C3H family protein