PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN08071.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 383aa    MW: 42861.3 Da    PI: 7.977
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN08071.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.24.5e-131153345
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                i+ +  r  tf kR++g++ K + L +LCd+++++ii++++++
  PIN08071.1 11 ISKEKSRILTFKKRKQGLFTKLHQLTTLCDVNACMIIYGPKQE 53
                78888999********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    
MGRAKLKLEL ISKEKSRILT FKKRKQGLFT KLHQLTTLCD VNACMIIYGP KQEHGAVEPE  60
IWPQNREEVR RIIGLYEAKN RGKGSSFGNN RTSTFGLSDF FRERKRKIED ETVRLRRKNM  120
KAKYPTPVDL LNFSTAEELR EFGALLKNKA EIIKSRIEFL KGNRGGIMNE DQSHDSDNVF  180
CESTAAMGVF QNPMAVATMG NTGVFQNPVA VEQYYVPPVL VQPLPPLYMH CAGGMGVVAQ  240
PQLYTQCLGM GGVAPPQMQF PAMENYENGD DGLEDIIFQR APWTGVVAPP QLYMQCFGMG  300
GVAPPQRPFR AMENYENDGG GLEDITLQRT AEMGGMGGIA RRLYSQCTEM DRVAPAFYSQ  360
CPGMDGVAPP QMHFPSMEIN YMV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.14e-16M-type_MADS family protein