PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN08070.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 313aa    MW: 35130.5 Da    PI: 6.8953
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN08070.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.63.3e-131153345
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                i+ +  r  tf kR++g++ K + L +LCd+++++ii++++++
  PIN08070.1 11 ISKEKSRILTFKKRKQGLFTKLHQLTTLCDVNACMIIYGPKQE 53
                78889999********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MGRAKLKLEL ISKEKSRILT FKKRKQGLFT KLHQLTTLCD VNACMIIYGP KQEHGATEPE  60
IWPQNLEEVR RIIGLYEAKN RGNGSSSGNN RTSTFGLSDF FHERKRKIEE EIVRLRRKNM  120
EAKYPTPVEL LNFSTEVELR EFGALLKNKA EIVKSRIEFL KGNRGGGLIN ENQSHDFGFF  180
YESTAAAMGD PVISGNIPMA VPQYYQPPVV PPLPPLYMQC APPPPPLYMQ CFEMGGMSLP  240
QVQFPLSKQI NCGNDDIVED ILQCPAGGMG GVAPLLYLQC AGMDGETPPQ PLPLPFLSSW  300
EINYGNDDIF QYV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-13M-type_MADS family protein