PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN07911.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 245aa    MW: 27765.4 Da    PI: 9.4068
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN07911.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.61.1e-202369349
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 enksn qvtfskRr g++KKA+EL++L +aev v++fs+ +k y +
  PIN07911.1 23 MENKSNLQVTFSKRRLGVFKKASELCTLSGAEVIVVVFSPGNKAYSF 69
                69*****************************************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MSSRDRSQAR KHKGRRKVNM VKMENKSNLQ VTFSKRRLGV FKKASELCTL SGAEVIVVVF  60
SPGNKAYSFG QPNVDNIADR FLNSNSSLVN IANQSVHIQQ RQNSNSQSDL EYLARIESQI  120
EVEKVRGEEI NQTKNAYEKE AWIPAMTSIE ELNYKQLDHL KKAIIDFGQK LQTRMGKVVN  180
HMMPYNETPS TYYVKEGGLP FCAGSSSKFD IPSCATMIPS YRMEHNTVIP YDHEATGPSE  240
VDKSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-39M-type_MADS family protein