PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN07842.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 212aa MW: 23734.3 Da PI: 9.2193 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.2 | 1.6e-21 | 16 | 63 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie k qvtfskRr g++KKA+EL++LC++e+a+ +fs+ gk++ + PIN07842.1 16 KIEVKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIFVFSPAGKVFSF 63 68889999*************************************988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence |
MAKKPSMGRQ KIKIEKIEVK NHLQVTFSKR RSGLFKKASE LCTLCGVEIA IFVFSPAGKV 60 FSFGHPNVDS IIDMYLTRNP APNSNDPFNL VKAQRNVTVK ELNLQLGQIM NEIELERKRD 120 ENLDNLRKTN ERQCWWEGPV EKLGLGELEQ LRDAMEELKK NVAQQVNKLM NTPPAIFAAN 180 GGAVLDQYES KPGQGIVVPG GNGGFGYCHG FF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-53 | M-type_MADS family protein |