PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN07502.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | C3H | ||||||||
Protein Properties | Length: 481aa MW: 50646.9 Da PI: 8.0449 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36 | 1.2e-11 | 51 | 76 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C +G+rC+F+H++ PIN07502.1 51 EEPDCIYYLRTGFCGFGNRCRFNHPR 76 5799********************96 PP | |||||||
2 | zf-CCCH | 37.2 | 5.1e-12 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG CkyG++Ck++H++ PIN07502.1 98 HPVCQYYMRTGMCKYGASCKYHHPK 122 689********************96 PP | |||||||
3 | zf-CCCH | 36.5 | 8.2e-12 | 142 | 168 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +tG+Ck+G++CkF+H++ PIN07502.1 142 PGERECSYYIKTGQCKFGATCKFHHPQ 168 5789*********************97 PP | |||||||
4 | zf-CCCH | 37.3 | 4.6e-12 | 303 | 329 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++Ck++H+p PIN07502.1 303 PGQAECQYYLRTGDCKFGATCKYHHPP 329 5789*********************97 PP | |||||||
5 | zf-CCCH | 37.8 | 3.1e-12 | 351 | 375 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC+++a++G+Ck+G++CkF H++ PIN07502.1 351 APLCSHYAQNGICKFGPSCKFDHPM 375 68*********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence |
MERYSGTQAM DAVPVDPVAE WAPPGGETGL EEPMWQLGLG GGPESYPERP EEPDCIYYLR 60 TGFCGFGNRC RFNHPRDRSM AMGAIRAGGG EYPERVGHPV CQYYMRTGMC KYGASCKYHH 120 PKQAVGSSAP VPLNIYGYPL RPGERECSYY IKTGQCKFGA TCKFHHPQPA GLEGPTPAPA 180 PGPGPLAAPT VYPTVQSPSV QSSQQYGLIQ GNWPVARPAM LPGYGPMLLP PGVVPVPGWT 240 PYPAPLSPVA SASTQPTVGA NPLYGITQLS PSATSYTGPY LSITSSAGPS SSSQKEHSFP 300 ERPGQAECQY YLRTGDCKFG ATCKYHHPPD LRASRTSLVL SPVGLPLRPG APLCSHYAQN 360 GICKFGPSCK FDHPMRTLSY SPSASSLTDM PVAPYPVGST NATLAPSSSS SDLRPELLSG 420 FSKDALSSQM SSMNSSSASV GSAFSKSGAV SQSTIQQSGQ GSISTSGGSS TSHGGEVHMS 480 S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 1e-124 | C3H family protein |