PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN06025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | C3H | ||||||||
Protein Properties | Length: 179aa MW: 19131.7 Da PI: 8.5944 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.9 | 2.2e-10 | 137 | 163 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 yk++lCrf+ +G C +G+ C+FaHg+ PIN06025.1 137 YKHRLCRFWGTGGACLFGSECQFAHGK 163 9************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence |
MENPRSSKAT KLKSTDDVLS PINMLNFACG RHYSSVFDPY ASDSSDSPSP LMKYLRSADP 60 AALVDSPPVF LTPVKVEEDV IVMDGIPVPK SNKKCTEVKT RLPLTSSSVV GGSAGGLNSI 120 SSGAGARGNG NDNSKSYKHR LCRFWGTGGA CLFGSECQFA HGKEELRPTR SSCKIQLEV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 3e-07 | C3H family protein |