PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN05514.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | C3H | ||||||||
Protein Properties | Length: 326aa MW: 36858.2 Da PI: 7.4469 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.5 | 1.4e-10 | 95 | 120 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt++C f++ GtC+ G+ C+FaHg+ PIN05514.1 95 YKTRICAKFME-GTCRNGEHCTFAHGQ 120 9**********.*************97 PP | |||||||
2 | zf-CCCH | 25.8 | 1.8e-08 | 156 | 178 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +++C+ ++ + +C+yGd+C+F H PIN05514.1 156 MKICKKYYNGEECPYGDKCNFLH 178 579******66************ PP | |||||||
3 | zf-CCCH | 39.6 | 9e-13 | 221 | 246 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ + G+C+yG+rC+FaHg+ PIN05514.1 221 WKTKLCSKWEM-GQCPYGERCHFAHGQ 246 8**********.*************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence |
MSFPSQTPPP HSYISQPSAG GISAGFWPPY LNGNEQNQQT PPSNFTSQQF DDPPPPFKRP 60 KTSENSQNFT SFPPPNTRFN PANVQGTKGT SHIFYKTRIC AKFMEGTCRN GEHCTFAHGQ 120 EDLREPPRNW QELIREKDRG SGSGSWGDDQ RMIHRMKICK KYYNGEECPY GDKCNFLHER 180 PLGLPPMKKF KVDMPEQRDS SAIIIGDGRG SNSDFDQVAF WKTKLCSKWE MGQCPYGERC 240 HFAHGQSELR LSGTLNEPEP VTTTGSISRK PVSVSVTTAP ATVVVGAPLN RDEEQKEALK 300 WKLTKKINRI YGDWLDDLDS PDYEEM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 3e-63 | C3H family protein |