PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN05514.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family C3H
Protein Properties Length: 326aa    MW: 36858.2 Da    PI: 7.4469
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN05514.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.51.4e-1095120127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ykt++C  f++ GtC+ G+ C+FaHg+
  PIN05514.1  95 YKTRICAKFME-GTCRNGEHCTFAHGQ 120
                 9**********.*************97 PP

2zf-CCCH25.81.8e-08156178325
                 S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                 +++C+ ++ + +C+yGd+C+F H
  PIN05514.1 156 MKICKKYYNGEECPYGDKCNFLH 178
                 579******66************ PP

3zf-CCCH39.69e-13221246127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +kt+lC+ +   G+C+yG+rC+FaHg+
  PIN05514.1 221 WKTKLCSKWEM-GQCPYGERCHFAHGQ 246
                 8**********.*************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MSFPSQTPPP HSYISQPSAG GISAGFWPPY LNGNEQNQQT PPSNFTSQQF DDPPPPFKRP  60
KTSENSQNFT SFPPPNTRFN PANVQGTKGT SHIFYKTRIC AKFMEGTCRN GEHCTFAHGQ  120
EDLREPPRNW QELIREKDRG SGSGSWGDDQ RMIHRMKICK KYYNGEECPY GDKCNFLHER  180
PLGLPPMKKF KVDMPEQRDS SAIIIGDGRG SNSDFDQVAF WKTKLCSKWE MGQCPYGERC  240
HFAHGQSELR LSGTLNEPEP VTTTGSISRK PVSVSVTTAP ATVVVGAPLN RDEEQKEALK  300
WKLTKKINRI YGDWLDDLDS PDYEEM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-63C3H family protein