PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN05480.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

Trihelix

Protein Properties

Length: 349aa MW: 39447 Da PI: 8.6074

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN05480.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.8	1.6e-14	64	154	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ +++Li+a + + +rg l +++W+ev++++ +++ +r+ +qC+++++ ++kryk +k + + + + +st+p+f++l+ PIN05480.1 64 CWSEDATRTLIDAWGRYYLEHNRGHLSQKHWQEVADAVnavhiTSGKHRRTDIQCQNRIDTVKKRYKIEKSNTVESNGRYKSTWPHFERLD 154 7***************************************999999***************999999998888999*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MIPHRTASHD TCDSETPSSS PRRRLSDDGK HVPSSLCYPT KPELSSDPKP PARRTPVFPS 60 REDCWSEDAT RTLIDAWGRY YLEHNRGHLS QKHWQEVADA VNAVHITSGK HRRTDIQCQN 120 RIDTVKKRYK IEKSNTVESN GRYKSTWPHF ERLDSLIGDS FPKTQNNNAN GHHRNLRPGI 180 SRSPELSPSP TSAPATLTKH RKSLPAMSHH QEKYPAVGPV GPSSKRSAPT SVAERNFSLM 240 AAAAAAVEAA EHEKDDDEDD STQWDWQPPA VDRTRKPSIE GFKMLAEAIT RLGEIYQKVE 300 TAKQQQILEL EKEKMLFAKD LEIERMGFFM ESLVGIEELK RATHRSGNS

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MIPHRTASHD TCDSETPSSS PRRRLSDDGK HVPSSLCYPT KPELSSDPKP PARRTPVFPS  60
REDCWSEDAT RTLIDAWGRY YLEHNRGHLS QKHWQEVADA VNAVHITSGK HRRTDIQCQN  120
RIDTVKKRYK IEKSNTVESN GRYKSTWPHF ERLDSLIGDS FPKTQNNNAN GHHRNLRPGI  180
SRSPELSPSP TSAPATLTKH RKSLPAMSHH QEKYPAVGPV GPSSKRSAPT SVAERNFSLM  240
AAAAAAVEAA EHEKDDDEDD STQWDWQPPA VDRTRKPSIE GFKMLAEAIT RLGEIYQKVE  300
TAKQQQILEL EKEKMLFAKD LEIERMGFFM ESLVGIEELK RATHRSGNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	7e-40	Trihelix family protein