PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN05235.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

CO-like

Protein Properties

Length: 417aa MW: 47174.5 Da PI: 5.8213

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN05235.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	28.9	2.4e-09	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+++ + +++++C ++ +lCe+C ++ H+ H++v PIN05235.1 16 ARPCDNCVRRRARWYCAADDAFLCESCDSSVHSAntlarrHERV 59 689*****************************657788888876 PP
2	CCT	67.7	3.2e-23	356	399	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a PIN05235.1 356 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 399 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MVSDRKLANA VGGKSARPCD NCVRRRARWY CAADDAFLCE SCDSSVHSAN TLARRHERVR 60 LKTESNTINS SYNKPKAGCH DSGPSWHLGF TKKARTPRPK KRVNPNNGIS NSFHDLVPEI 120 CSEDNSHEDN EAQLLYRVPI FDPYVEELCN SNEAGVKNVH NESKVEGVND FNHLQGFLPS 180 ETDLEEFAAN VESLLGKGME DESFNMEGLG LVDCDDEKGN ESKACFLSER VIKVEDEEVG 240 EQENRQYDVQ FDMGKETFEL NFDLEYSPIT CEVEEDNKAQ TLDDLNKINY NFLKLDHESV 300 MSAWDDQKSP WTTGERPEFN SDGWPDCLGT SGAMHAYGDH MGIMSAHAAA MADRGREARV 360 SRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGRFVKRAN FGAPAPAPAP AFPLLSK

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MVSDRKLANA VGGKSARPCD NCVRRRARWY CAADDAFLCE SCDSSVHSAN TLARRHERVR  60
LKTESNTINS SYNKPKAGCH DSGPSWHLGF TKKARTPRPK KRVNPNNGIS NSFHDLVPEI  120
CSEDNSHEDN EAQLLYRVPI FDPYVEELCN SNEAGVKNVH NESKVEGVND FNHLQGFLPS  180
ETDLEEFAAN VESLLGKGME DESFNMEGLG LVDCDDEKGN ESKACFLSER VIKVEDEEVG  240
EQENRQYDVQ FDMGKETFEL NFDLEYSPIT CEVEEDNKAQ TLDDLNKINY NFLKLDHESV  300
MSAWDDQKSP WTTGERPEFN SDGWPDCLGT SGAMHAYGDH MGIMSAHAAA MADRGREARV  360
SRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGRFVKRAN FGAPAPAPAP AFPLLSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	367	383	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	9e-95	CO-like family protein