PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN03427.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 423aa MW: 46420.1 Da PI: 8.6917

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN03427.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.9	2.6e-11	49	73	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++ rtG C++G++C+F+H+p PIN03427.1 49 EPDCSYYIRTGLCRFGATCRFNHPP 73 689********************97 PP
2	zf-CCCH	38.2	2.4e-12	94	118	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tGtCk+G++CkF+H++ PIN03427.1 94 QPECEYYLKTGTCKFGATCKFHHPR 118 799********************96 PP
3	zf-CCCH	32.1	1.9e-10	140	164	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C ++ r+G+Ck+G++CkF+H++ PIN03427.1 140 ETECAYYVRNGQCKFGSTCKFHHPQ 164 578********************97 PP
4	zf-CCCH	36.3	9.7e-12	287	313	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f+++tG Ck+G+ CkF+H++ PIN03427.1 287 PGQPECLFYMKTGDCKFGAVCKFHHPR 313 5789*********************96 PP
5	zf-CCCH	36.9	6e-12	333	359	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f++r+G+Ck+G++CkF H++ PIN03427.1 333 PGEPPCVFYSRYGICKFGPSCKFDHPM 359 5899*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MSRVSVTAVA SSASSSLHLH PHHQDALWQM NMRSREQTDS GPYPVRESEP DCSYYIRTGL 60 CRFGATCRFN HPPNRQLAIA TARMKGEYPE RIGQPECEYY LKTGTCKFGA TCKFHHPRDK 120 AGSAGRVALN VLGYPLRPNE TECAYYVRNG QCKFGSTCKF HHPQPSNMMV SLRGSALYPP 180 LHSPTTGQLS FPLSRASFVA SPRWQSPSSY APLVMPQGVV SVPGWNTYNG HMGSVLSENQ 240 HPAAGNSQND GTSHQGESGN TGSQFHSGSV PMGYYAYQRE NVFPERPGQP ECLFYMKTGD 300 CKFGAVCKFH HPRERLVPVP DCALSPIGLP LRPGEPPCVF YSRYGICKFG PSCKFDHPMR 360 VFAYNAAASS ADSQAVRRFL ASSSGNVAFS PDGLVEAGSS NNRRLSLSES RQKPSGDNNI 420 DSE

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MSRVSVTAVA SSASSSLHLH PHHQDALWQM NMRSREQTDS GPYPVRESEP DCSYYIRTGL  60
CRFGATCRFN HPPNRQLAIA TARMKGEYPE RIGQPECEYY LKTGTCKFGA TCKFHHPRDK  120
AGSAGRVALN VLGYPLRPNE TECAYYVRNG QCKFGSTCKF HHPQPSNMMV SLRGSALYPP  180
LHSPTTGQLS FPLSRASFVA SPRWQSPSSY APLVMPQGVV SVPGWNTYNG HMGSVLSENQ  240
HPAAGNSQND GTSHQGESGN TGSQFHSGSV PMGYYAYQRE NVFPERPGQP ECLFYMKTGD  300
CKFGAVCKFH HPRERLVPVP DCALSPIGLP LRPGEPPCVF YSRYGICKFG PSCKFDHPMR  360
VFAYNAAASS ADSQAVRRFL ASSSGNVAFS PDGLVEAGSS NNRRLSLSES RQKPSGDNNI  420
DSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-177	C3H family protein