PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN03372.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

NF-X1

Protein Properties

Length: 872aa MW: 97254.5 Da PI: 8.3535

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN03372.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	20.6	9.4e-07	240	259	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG H+C+++CH G C pC++ PIN03372.1 240 CGVHRCGEICHDGSCLPCRE 259 ******************85 PP
2	zf-NF-X1	18.1	6.1e-06	400	419	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C++ C+ G+CppC++ PIN03372.1 400 CGRHACKRRCCDGDCPPCSE 419 ******************85 PP
3	zf-NF-X1	17.8	7.3e-06	429	446	3	20
zf-NF-X1 3 kHkCqklCHeGpCppCpq 20 +HkC ++CH+G C pCp+ PIN03372.1 429 NHKCPAPCHRGACAPCPL 446 7***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 872 aa Download sequence
MPSSNSQPPL LSSPLSSDSD SDGSSTSNSP SAHPRHPDLS SSIFQSYLSH SSSHPDHHQD 60 LIKIQSFLTS SRSGALSCLI CLERIKHTDP SWSCSSRCFA VFHLFCIQSW AQQSTTLAAS 120 RASSRAAVVP DENSLVWPCP KCRIEYPKSR TPKNYYCFCG KVQDPPRDPW VLPHSCGEIC 180 GRALKYDCGH FCLLLCHPGP CPACPKLVRS KCFCGKLEDV RRCGFKNFSC NGVCGKLLEC 240 GVHRCGEICH DGSCLPCREK GTYKCQCGKV EMERECCERD FRCNNACNKM LGCGRHVCER 300 GCHEGECGDC PLQGKRTCPC GNRVYEGMAC DVSVPLCGAT CEKLLSCGYH RCPERCHRGP 360 CIETCRTVVT KSCRCGSFKK QVPCYQELTC ERKCQKVRDC GRHACKRRCC DGDCPPCSEV 420 CDRRLRCRNH KCPAPCHRGA CAPCPLMVRI SCSCGTTQFE VPCGTENAQK PPKCSKPCPV 480 ALLCRHASNC KPHRCHYGAC PTCRLICDEE YSCGHKCKLR CHGPKPPPLP EFTLKPKKKK 540 LNHLSEATAG SPCPPCPELV LRSCVGHHIG AERMMVCSQK AEFSCDNLCG NPLPCGNHYC 600 TYVCHAVKSH SSNSDAHGTG ESCEECNLPC QKERNPACPH PCPLRCHPGE CPPCKALIKR 660 LCHCGSMVHV FECKYFNCMS EKEQMAVRSC KGPCHRKLPN CTHLCPQTCH PGPCPSPDKC 720 FKKVTVRCAC QAVKKEWLCQ DVQSAYQSSG CDPKDVSRNQ YGVGLLPCDN DCKSKVKVLD 780 SELHFRQAKP REEKVSDKAN NVSKRRRRRQ KVHEEENISR LQKIVTVFRR VLLILIIAVT 840 IVASAYYGYK GLMWLSDWMN ENEARRRRYP HF

Sequence ? help Back to Top

Protein Sequence Length: 872 aa Download sequence

MPSSNSQPPL LSSPLSSDSD SDGSSTSNSP SAHPRHPDLS SSIFQSYLSH SSSHPDHHQD  60
LIKIQSFLTS SRSGALSCLI CLERIKHTDP SWSCSSRCFA VFHLFCIQSW AQQSTTLAAS  120
RASSRAAVVP DENSLVWPCP KCRIEYPKSR TPKNYYCFCG KVQDPPRDPW VLPHSCGEIC  180
GRALKYDCGH FCLLLCHPGP CPACPKLVRS KCFCGKLEDV RRCGFKNFSC NGVCGKLLEC  240
GVHRCGEICH DGSCLPCREK GTYKCQCGKV EMERECCERD FRCNNACNKM LGCGRHVCER  300
GCHEGECGDC PLQGKRTCPC GNRVYEGMAC DVSVPLCGAT CEKLLSCGYH RCPERCHRGP  360
CIETCRTVVT KSCRCGSFKK QVPCYQELTC ERKCQKVRDC GRHACKRRCC DGDCPPCSEV  420
CDRRLRCRNH KCPAPCHRGA CAPCPLMVRI SCSCGTTQFE VPCGTENAQK PPKCSKPCPV  480
ALLCRHASNC KPHRCHYGAC PTCRLICDEE YSCGHKCKLR CHGPKPPPLP EFTLKPKKKK  540
LNHLSEATAG SPCPPCPELV LRSCVGHHIG AERMMVCSQK AEFSCDNLCG NPLPCGNHYC  600
TYVCHAVKSH SSNSDAHGTG ESCEECNLPC QKERNPACPH PCPLRCHPGE CPPCKALIKR  660
LCHCGSMVHV FECKYFNCMS EKEQMAVRSC KGPCHRKLPN CTHLCPQTCH PGPCPSPDKC  720
FKKVTVRCAC QAVKKEWLCQ DVQSAYQSSG CDPKDVSRNQ YGVGLLPCDN DCKSKVKVLD  780
SELHFRQAKP REEKVSDKAN NVSKRRRRRQ KVHEEENISR LQKIVTVFRR VLLILIIAVT  840
IVASAYYGYK GLMWLSDWMN ENEARRRRYP HF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	804	809	KRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein