PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN03003.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family HD-ZIP
Protein Properties Length: 726aa    MW: 79636.1 Da    PI: 5.7557
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN03003.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.99.7e-2058113156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  PIN03003.1  58 KKRYHRHTQHQIQEMESFFNECPHPDDKQRKELGRRLGLEPLQVKFWFQNKRTQMK 113
                 688999***********************************************998 PP
2START215.51.8e-672464661206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela +a++el+++a+a+ep+W        e + ++e+++ f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW+  +     +a tlev+s
  PIN03003.1 246 ELAVAAMEELIRMAQAGEPLWIPGTdnsaETLSEEEYVRAFPRGIGpkplgLKSEASRESAVVIMNHINLVEILMDVN-QWSSVFSsivsRAVTLEVLS 343
                 57899****************9877777799************999********************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 +g      galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d+ ++ +    + R++++pSg+li++++ng+skvtwvehv+ ++r +h
  PIN03003.1 344 TGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHTDGTWAVVDVSLDNLRPTS----MSRCRRRPSGCLIQELPNGYSKVTWVEHVEIDDRAVH 438
                 *******************************************************965....8************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                 +++++lv+sgla+gak+wvatl+rqce+
  PIN03003.1 439 NIYKPLVNSGLAFGAKRWVATLDRQCER 466
                 **************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    
MFQPNMFDSH HQLLDMAHKT PENEMDLIRD DEYESKSGTD IMEAPSGDDQ DPNQRPKKKR  60
YHRHTQHQIQ EMESFFNECP HPDDKQRKEL GRRLGLEPLQ VKFWFQNKRT QMKAQHERHE  120
NTQLRTENEK LRAENIRYKE ALSNATCPNC GGPAAIGEMS FDEQHLRIEN ARLREEIDRI  180
SGIAAKYVGK PMLSYPHLPP GASRSLDLGV GNFGPQTGIS GEIYGAADLL RSVSGPTDAD  240
KPMIIELAVA AMEELIRMAQ AGEPLWIPGT DNSAETLSEE EYVRAFPRGI GPKPLGLKSE  300
ASRESAVVIM NHINLVEILM DVNQWSSVFS SIVSRAVTLE VLSTGVAGNY NGALQVMTAE  360
FQVPSPLVPT RENYFVRYCK QHTDGTWAVV DVSLDNLRPT SMSRCRRRPS GCLIQELPNG  420
YSKVTWVEHV EIDDRAVHNI YKPLVNSGLA FGAKRWVATL DRQCERLASV LANNISAGDV  480
GVISSPEGRK SMLKLAERMV MSFCTGVGAS TAHTWTTLSG SGADDVRVMT RKSMDDPGRP  540
PGIVLSAATS FWLPVPPKRV FDFLRDENSR SEWDILSNGG LVQEMAHIAN GRDPGNSVSL  600
LRVNSANSSQ SNMLILQESS TDATGSYVIY APVDIVAMNV VLSGGDPDYV ALLPSGFAIL  660
PEGPNNPTAG VPESGNGGSL LTVAFQILVD SVPTAKLSLG SVATVNSLIK CTVERIKGAV  720
LCDGTQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein