PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN02672.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | LSD | ||||||||
Protein Properties | Length: 175aa MW: 18217.3 Da PI: 8.5519 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.7 | 9e-14 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr lL+YP GA++V+CalC+ V PIN02672.1 7 CSGCRSLLMYPSGATNVCCALCNSV 31 ***********************98 PP | |||||||
2 | zf-LSD1 | 49.7 | 6e-16 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+tV PIN02672.1 46 CGGCRTLLMYTRGATSVRCSCCHTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 49.8 | 5.4e-16 | 83 | 107 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ PIN02672.1 83 CGSCHTTLMYPYGAPSVKCAVCQFI 107 ***********************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence |
MQSQIVCSGC RSLLMYPSGA TNVCCALCNS VTTVPPPGME MAQLICGGCR TLLMYTRGAT 60 SVRCSCCHTV NLAPAPNIAH INCGSCHTTL MYPYGAPSVK CAVCQFITNV NMGNVRVPIP 120 KHRPVGPPSA ASTPSTSAAL PNSQSQTVVV ENPMSVDKSG KLVSNVVVGV TTDKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 2e-72 | LSD family protein |