PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN01634.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family Trihelix
Protein Properties Length: 506aa    MW: 57253.7 Da    PI: 6.9766
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN01634.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.97.5e-3093178187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  PIN01634.1  93 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 178
                 8*************************************999*****************************98..55667*******85 PP
2trihelix60.44.6e-19373445277
    trihelix   2 WtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 
                 W++ e+ +Li++r+++e +++ rg+ +  lWee+++km+  g+ rs+++Ckekwe++n++  k+++ +k+++    +
  PIN01634.1 373 WPECEINKLIQLRTSLEVKFQqRGACEDVLWEEIAAKMACLGYDRSAIMCKEKWESVNNYLLKCNKKRKENS----K 445
                 ********************955899****************************************999853....2 PP
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    
MEDQYGMADL RQYITSRPLF PPIPQPPDLL STHRGLNAPP HPYDMLVFRS DSTTVNTNAA  60
ASSSAAAGGC FSGFESGLNG SGGGGGGDGG AGRWPRQETL TLLEIRSRLD PKFKEANQKG  120
PLWDEVSRIM SEEHGYQRSG KKCREKFENL YKYYKKTKEG KAGRQDGKHY RFFRQLEALY  180
GETNNSNSAS LSEANPISGS FHYNFPKNPS LPNNQEAFQK LSDTSLSLSN YSDADTTSSD  240
DTDLNEGIDD NDAKNKRRRG KRGWKGKIKD FIDSQMKRLM DKQEAWMEKM MKTIENKEQE  300
RMLREEEWRK QDAARIEREH RFWASERAWI EARDAALMDA LQKLTGKELI SLSENQNDNG  360
SETMNNSVGG DVWPECEINK LIQLRTSLEV KFQQRGACED VLWEEIAAKM ACLGYDRSAI  420
MCKEKWESVN NYLLKCNKKR KENSKSCINY YQGGGGGGAY CDASDHMIRV NDHGNNSTSS  480
PNTANHVIND SCFRYFMGDA YGRIMD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255262NKRRRGKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-122Trihelix family protein