PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN01303.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

CO-like

Protein Properties

Length: 370aa MW: 40471.5 Da PI: 6.4139

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN01303.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.6	1e-07	23	54	4	35
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 + C+ +++ + lfC+ ++ +lC C + H+ PIN01303.1 23 KPCDYCNSASALLFCRADSAFLCMACDATVHN 54 67***************************995 PP
2	zf-B_box	22.4	2.6e-07	67	111	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ +e+ + C+ + lC++C +H+ H++ p PIN01303.1 67 VWMCDVCEQAPSAVTCKADAAALCHNCDRDIHSAnplarrHERAP 111 689*****************************6578888888766 PP
3	CCT	70.8	3.5e-24	298	341	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ PIN01303.1 298 REARVLRYKEKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 341 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MIQEADGAVQ TKYFPAGWSG AAKPCDYCNS ASALLFCRAD SAFLCMACDA TVHNVDDKMV 60 AMKHGRVWMC DVCEQAPSAV TCKADAAALC HNCDRDIHSA NPLARRHERA PVVPFYDTAE 120 SMVMKSASAT LPVPVIGGCG DDIFSDKKVE ISPVQIGNYM PADSWISSDP IITTKLSADN 180 PDIKSLDFLF SDSDPFIDFD NYQICSRPYS DSAVPVQTTM KPPVAAQLSH QHSPDNRFEI 240 DFTRSNITSY SNSYTGPSLS HSVSSSSLDV GVVPDGSAIS EISYPSGKTG SHVIGMDREA 300 RVLRYKEKRK NRKFEKTIRY ASRKAYAETR PRIKGRFAKR TDSESDLDAI FGSGAGNFID 360 DVRYGVVPSF

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MIQEADGAVQ TKYFPAGWSG AAKPCDYCNS ASALLFCRAD SAFLCMACDA TVHNVDDKMV  60
AMKHGRVWMC DVCEQAPSAV TCKADAAALC HNCDRDIHSA NPLARRHERA PVVPFYDTAE  120
SMVMKSASAT LPVPVIGGCG DDIFSDKKVE ISPVQIGNYM PADSWISSDP IITTKLSADN  180
PDIKSLDFLF SDSDPFIDFD NYQICSRPYS DSAVPVQTTM KPPVAAQLSH QHSPDNRFEI  240
DFTRSNITSY SNSYTGPSLS HSVSSSSLDV GVVPDGSAIS EISYPSGKTG SHVIGMDREA  300
RVLRYKEKRK NRKFEKTIRY ASRKAYAETR PRIKGRFAKR TDSESDLDAI FGSGAGNFID  360
DVRYGVVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	2e-87	CO-like family protein