PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN00701.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 86aa MW: 9855.66 Da PI: 10.4852 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.8 | 9.1e-26 | 2 | 41 | 12 | 51 |
HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 tfskRrng+lKKA+ELSvLCdaeva+iifs++g+lye+ss PIN00701.1 2 TFSKRRNGLLKKAYELSVLCDAEVALIIFSQKGRLYEFSS 41 9*************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence |
MTFSKRRNGL LKKAYELSVL CDAEVALIIF SQKGRLYEFS SSKVKMKATM FRCKCLFDNS 60 NSTRNLKTGC EKSHLAFNIF LTKAFV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 5e-23 | MIKC_MADS family protein |