PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN00272.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | C3H | ||||||||
Protein Properties | Length: 357aa MW: 39688.5 Da PI: 7.7165 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.4 | 2.2e-07 | 124 | 145 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G C+ Gd C +aHg PIN00272.1 124 SACPDFRK-GACRKGDACEYAHG 145 67******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence |
MMSWSNPTVE IPSWDYHHLE DPTAHIHSPV AHSSPDTCHY ENAFAALQRY LPANKDDIVP 60 ADGEDSEDFD VPVDAFSCDD FRMFEFKVKK CGLARSHDWT ACPFAHPGEK ARRRDPRKYH 120 YSGSACPDFR KGACRKGDAC EYAHGVFECW LHPARYRTQP CKDGTHCRRR VCFFAHTAEQ 180 LRVLPYSSSP DASPSQIGQD PFVSVGFFSS SPKSTLYSPP PSSPTTGSPP VSPSGSMRLN 240 SVNQLTESMR SLQLNKMKMG MGLSASPPSW GGRIGSPRSS PTVRPGFTSL PSTPIRRLSA 300 FDHWGTHCEE EPVMERVESG KQLRERIYAK LVKENSLDRV NSAGPGPDVG WVAELVK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 1e-104 | C3H family protein |