PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIM99835.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 694aa MW: 77251.7 Da PI: 6.8414

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIM99835.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.6	6.8e-06	99	123	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 +C+ a++G C+y ++C+F+H+ PIM99835.1 99 ICPEVAKSGkvsSCPYNEKCRFSHD 123 599999999999************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence
MEDPNVLDNT SKDVLAEVPA PAKSQPSAEE LVAKAIAPVK REFLRPPPLR ACDGNNNNKA 60 DDKASVQNDG ASAPILKEKK SKRQQKRERR QEQKSALHIC PEVAKSGKVS SCPYNEKCRF 120 SHDLEAFKAQ KPDDLEGMCP FLSSAGPCPY GLACRFAGTH KDDNVEVASG PIDRDKRSGE 180 MNALKKDVQK LLWKNKMKFP KADAALKFLG LVGQGKKKKI EGNNDDDQIV VNGSGAVDGN 240 GCCGATADSS NGVDCSTEFL EEDKLGEADV ADELRPPKKT KCSIDETSLM PLDNDQIHHE 300 KDMDKSCKQS DSETIIENIA EDNDKCLKLH PREKKLIDFR EKLYLAPLTT VGNLPYRRVC 360 KFLGADVTCG EMAMCTNLLQ GQASEWALLR RHSSEDFFGV QICGAYPDTV ARTVELIDQH 420 CTVDFIDVNM GCPIDIVVNK GAGSALLTKP MRMKSVIDAS SRAVDTTLTI KVRTGYFEGK 480 NRIDSLIQDI GNWGATAVTI HGRTRQQRYS KLADWEYIYK CARAAPSSLQ VLGNGDVFSY 540 LDWNNHKSDC PELSTCMIAR GALIKPWIFT EIKEQRHWDI TSGERLNILK DYVRFGLEHW 600 GSDSKGVETT RHFLLEWLSY TCRYIPVGLL DVIPQRINWR PPSYFGRDDL ETLMASDSAA 660 DWIRISEMLL GKVPSGFTFA PKHKSNAYDR AENG

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence

MEDPNVLDNT SKDVLAEVPA PAKSQPSAEE LVAKAIAPVK REFLRPPPLR ACDGNNNNKA  60
DDKASVQNDG ASAPILKEKK SKRQQKRERR QEQKSALHIC PEVAKSGKVS SCPYNEKCRF  120
SHDLEAFKAQ KPDDLEGMCP FLSSAGPCPY GLACRFAGTH KDDNVEVASG PIDRDKRSGE  180
MNALKKDVQK LLWKNKMKFP KADAALKFLG LVGQGKKKKI EGNNDDDQIV VNGSGAVDGN  240
GCCGATADSS NGVDCSTEFL EEDKLGEADV ADELRPPKKT KCSIDETSLM PLDNDQIHHE  300
KDMDKSCKQS DSETIIENIA EDNDKCLKLH PREKKLIDFR EKLYLAPLTT VGNLPYRRVC  360
KFLGADVTCG EMAMCTNLLQ GQASEWALLR RHSSEDFFGV QICGAYPDTV ARTVELIDQH  420
CTVDFIDVNM GCPIDIVVNK GAGSALLTKP MRMKSVIDAS SRAVDTTLTI KVRTGYFEGK  480
NRIDSLIQDI GNWGATAVTI HGRTRQQRYS KLADWEYIYK CARAAPSSLQ VLGNGDVFSY  540
LDWNNHKSDC PELSTCMIAR GALIKPWIFT EIKEQRHWDI TSGERLNILK DYVRFGLEHW  600
GSDSKGVETT RHFLLEWLSY TCRYIPVGLL DVIPQRINWR PPSYFGRDDL ETLMASDSAA  660
DWIRISEMLL GKVPSGFTFA PKHKSNAYDR AENG