PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIM99537.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family HD-ZIP
Protein Properties Length: 748aa    MW: 83704.5 Da    PI: 6.4093
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIM99537.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.53.6e-2193148156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 r+k +++t+eq++e+e+lF+++++p++++r +L+k+lgL  rqVk+WFqNrR++ k
  PIM99537.1  93 RKKYHRHTPEQIREMEALFKESPHPDEKQRLQLSKQLGLHPRQVKFWFQNRRTQIK 148
                 7999************************************************9877 PP
2START209.11.7e-652674884206
                 HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
       START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
                 ++a++el k+a+ +ep+W +s+    e++n+de++++f +++       +s+ea+r+sg+ + +l+ lv++++d + qW+e ++    ka+t++vis+g
  PIM99537.1 267 NRAMDELRKMATNGEPLWIRSYetgrEILNYDEYMKEFCSEDCgkmqskKSIEASRESGIIFVDLPWLVQSFMDAN-QWKELFPclvsKAATVDVISNG 364
                 589***********************************9888899*******************************.********************** PP

                 ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
       START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                       ga++lm+ae q+l+p+v+ R+++fvRy++q +a +w+ivd+Svd  +++  + s+ +++++pSg++ie+ksngh+kvtwveh ++++ ++h+l
  PIM99537.1 365 egvnrdGAVHLMFAEIQMLTPMVAtREVYFVRYCKQISANQWAIVDISVDKVEDNI-DTSLQKCRKRPSGCIIEDKSNGHCKVTWVEHLECQKTTVHSL 462
                 ******************************************************98.9***************************************** PP

                 HHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 181 lrslvksglaegaktwvatlqrqcek 206
                 +r +v+sgla+gak+w +tlq+qce+
  PIM99537.1 463 YRTIVNSGLAFGAKHWISTLQQQCER 488
                 ************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    
MSLVDMSSLP NSHPKHFPSS PALSLSLAGI FRDGRAAASE EREDTVEISS ENSGPAKSRS  60
DDDYELLAEG EQVNLIDDEE DDDDNNGNKK KKRKKYHRHT PEQIREMEAL FKESPHPDEK  120
QRLQLSKQLG LHPRQVKFWF QNRRTQIKAI QERHENSLLK TEIDKLRDEN KALRDSIKKS  180
SCPNCGFATS SKDSIAGTTE EQKLRIENSR LKAEVEKLRT VIGKFPGGIS PSSSSYPSEN  240
DQENKSSLDF YTGNFGMEKS RIMDAVNRAM DELRKMATNG EPLWIRSYET GREILNYDEY  300
MKEFCSEDCG KMQSKKSIEA SRESGIIFVD LPWLVQSFMD ANQWKELFPC LVSKAATVDV  360
ISNGEGVNRD GAVHLMFAEI QMLTPMVATR EVYFVRYCKQ ISANQWAIVD ISVDKVEDNI  420
DTSLQKCRKR PSGCIIEDKS NGHCKVTWVE HLECQKTTVH SLYRTIVNSG LAFGAKHWIS  480
TLQQQCERLV FLVATNVPTK DSNGVATLAG RKSILKLAQR MTWSFCRALG ASSLNSWNKI  540
TSKTGDDIRV ASRKNLNDPG EPLGTILSAV SCVWLPVSHH ALFEFLRDEN RRKEWDIMSC  600
GSTVQSIVNL AKGQDRGNAV TTLAMKTDEQ NVWVLQDSST NAYESMVVYA PVDINGMKSV  660
MNGCDSSNIA VLPSGFSILP DGIESRPFVI TSKPEEKSTE GGSVLTIAFQ ILISNSPTAK  720
LSVDSIDSVN TLVSCTLQNI KRSLQCED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18994KKKKRK
28995KKKKRKK
39195KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein