PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIM99410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | LBD | ||||||||
Protein Properties | Length: 169aa MW: 18839.3 Da PI: 7.8227 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 143.1 | 8.5e-45 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C+++Cv+apyfpa++p+kfa vhk+FGasnv k+l++l+e++r da+ss+vyeA+ar+rdPvyG+vg i+ lqqq+e l+ +lal+++ PIM99410.1 13 PCAACKLLRRRCSPQCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELEEHQRGDAVSSMVYEANARMRDPVYGCVGAISYLQQQIEGLRRQLALAQA 111 7**********************************************************************************************9997 PP DUF260 100 e 100 e PIM99410.1 112 E 112 6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence |
MEEIGRKQGA SSPCAACKLL RRRCSPQCVF APYFPADEPQ KFASVHKVFG ASNVNKMLQE 60 LEEHQRGDAV SSMVYEANAR MRDPVYGCVG AISYLQQQIE GLRRQLALAQ AEVVHLKVRQ 120 AASGQATSPS DHGSPSSYNL SYSKPSFEMD MDHMAVEQAR YRETMWSCT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 2e-67 | LBD family protein |