PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIM99402.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

HD-ZIP

Protein Properties

Length: 212aa MW: 24699.7 Da PI: 6.2667

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIM99402.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.3	1.7e-20	57	109	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le+ F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k PIM99402.1 57 KRKLSEEQVNMLEKSFGNEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWK 109 45899***********************************************9 PP
2	HD-ZIP_I/II	118.4	3.9e-38	56	147	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eqv++LE+sF +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++++ + e++rLe+e +++e+l+e PIM99402.1 56 RKRKLSEEQVNMLEKSFGNEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSEHETAVVEKCRLETELLKVKEHLHE 147 8*************************************************************************************999976 PP

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence
MNPEIDDQMV LISQYYPDGI YTHFAPEQGA AAANSKPRRR RKKNKGDQGG SDGVMRKRKL 60 SEEQVNMLEK SFGNEHKLES ERKDRLAAEL GLDPRQVAVW FQNRRARWKS KKLEEEYSKL 120 KSEHETAVVE KCRLETELLK VKEHLHEAEK EIQRLSERFD GFSSNSPSSS FSMEAIDPPP 180 YLGEFAMDQN VFLLPTENNY VHGLEWDNLY YM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	59	RRRRKKNKGDQGGSDGVMRKRK
2	39	60	RRRRKKNKGDQGGSDGVMRKRK
3	40	61	RRRRKKNKGDQGGSDGVMRKRK
4	41	62	RRRRKKNKGDQGGSDGVMRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	5e-56	HD-ZIP family protein