PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIM99118.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family ERF
Protein Properties Length: 363aa    MW: 39890.4 Da    PI: 4.7989
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIM99118.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.9e-2093143155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                 + y+GVr++  +g+WvAeIr+p     +   r +lg+fgta eAa a+++a+k+++g
  PIM99118.1  93 CNYRGVRQRT-WGKWVAEIREP-----HrgSRLWLGTFGTAAEAALAYDEAAKAMYG 143
                 56*****999.**********6.....337************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MSPEIDQRET NMAVLNQNQD FNLPAQPMDY TRKRKSRRRG GTNSVAETLA KWKEYNTKLD  60
SINNETKPVR RAPAKGSKKG CMKGKGGPEN ARCNYRGVRQ RTWGKWVAEI REPHRGSRLW  120
LGTFGTAAEA ALAYDEAAKA MYGPCARLNF PNYSSPKEYI GDSSLVASTT SASESANSSV  180
SEVCCDDAKT KVDAPWIKNE EGEGQSRATT PISAVKEEVM EEPPMEEVKE EVKEESMGSL  240
HSDPYPTYES GKAGEQKLES FPMDEMFDVD ELLAALDAVP HHGSGPHVGM GLYGGQVANG  300
GACVADMSSQ LPHSDSNLVG SMPHEQMTIG YDNGLDFLRP GRQEDYNFLL SDLFLDLDSD  360
LTI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13136TRKRKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.22e-32ERF family protein