PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIM99003.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

Trihelix

Protein Properties

Length: 605aa MW: 67205.8 Da PI: 5.7915

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIM99003.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	101.1	8.9e-32	63	147	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r+++lk+plWeevs+km+e gf+rs+k+Ckek+en+ k++k++k+g+ ++ +s+t+++fdqlea PIM99003.1 63 RWPRQETLALLKIRSDMDVAFRDSSLKGPLWEEVSRKMAELGFQRSAKKCKEKFENVYKYHKRTKDGRASK--SDSKTYRFFDQLEA 147 8******************************************************************95..78889*****85 PP
2	trihelix	104.3	8.7e-33	422	507	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r++++ +++++ k+plWee+s++m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea PIM99003.1 422 RWPKAEVEALIKLRTSLDLKYQETGPKGPLWEEISSAMAKLGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 507 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence
MMLDVSELMG GDDGAATAAD ANESGGASGG SSEVGASSSI PGGGMMEESE RSGGGGGGGG 60 GNRWPRQETL ALLKIRSDMD VAFRDSSLKG PLWEEVSRKM AELGFQRSAK KCKEKFENVY 120 KYHKRTKDGR ASKSDSKTYR FFDQLEALEN APPPPFTPPP PRPPPPSATA MAAPPMPSPH 180 ITVSSSSPVP TNNPITSSSF QPPPPLQPPP EAAQMNTSSN PPQTHTFQPV SFQSNSTSSS 240 TSSDEDIQRR RGRKRKWKDF FQRLMKDVIN KQEELQKKFL DTLEKRERDR TAREETWRVQ 300 EMARLNREHE LLVQERSIAA AKDAAMIAFL QKVTDQHNLQ IPIGANTNTN TPPPQVPVQV 360 QVHTQENPPP PQQPPPPPPP QAVPKPIPAP PIISTAITPT KSLDTPKTDN GRDNTNQASS 420 SRWPKAEVEA LIKLRTSLDL KYQETGPKGP LWEEISSAMA KLGYNRSSKR CKEKWENINK 480 YFKKVKESNK KRPEDSKTCP YFHQLEALYK EKAKNENVPS LNPAYVTMKP ENSNIMVPIM 540 ARPEQQWPLP QQSEHDATMP DQEHDNDSEN NDQEEDDYGD DEEEEDEGGG NYEIVTNKQP 600 SNTAE

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence

MMLDVSELMG GDDGAATAAD ANESGGASGG SSEVGASSSI PGGGMMEESE RSGGGGGGGG  60
GNRWPRQETL ALLKIRSDMD VAFRDSSLKG PLWEEVSRKM AELGFQRSAK KCKEKFENVY  120
KYHKRTKDGR ASKSDSKTYR FFDQLEALEN APPPPFTPPP PRPPPPSATA MAAPPMPSPH  180
ITVSSSSPVP TNNPITSSSF QPPPPLQPPP EAAQMNTSSN PPQTHTFQPV SFQSNSTSSS  240
TSSDEDIQRR RGRKRKWKDF FQRLMKDVIN KQEELQKKFL DTLEKRERDR TAREETWRVQ  300
EMARLNREHE LLVQERSIAA AKDAAMIAFL QKVTDQHNLQ IPIGANTNTN TPPPQVPVQV  360
QVHTQENPPP PQQPPPPPPP QAVPKPIPAP PIISTAITPT KSLDTPKTDN GRDNTNQASS  420
SRWPKAEVEA LIKLRTSLDL KYQETGPKGP LWEEISSAMA KLGYNRSSKR CKEKWENINK  480
YFKKVKESNK KRPEDSKTCP YFHQLEALYK EKAKNENVPS LNPAYVTMKP ENSNIMVPIM  540
ARPEQQWPLP QQSEHDATMP DQEHDNDSEN NDQEEDDYGD DEEEEDEGGG NYEIVTNKQP  600
SNTAE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	250	256	RRGRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-59	Trihelix family protein